SMTL ID : 2z95.1

Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 24 residues within 4Å: Chain A: G.10, R.12, G.13, Q.14, D.15, D.34, R.35, M.59, D.60, L.61, L.82, A.83, A.84, S.86, A.125, S.126, T.127, Y.151, K.155, L.178, F.179, N.180, H.181, R.186 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.10, A:R.12, A:G.13, A:D.15, A:D.15, A:R.35, A:D.60, A:L.61, A:L.62, A:L.82, A:A.84, A:S.86, A:Y.151, A:K.155, A:H.181, A:R.186, A:R.186 Water bridges: A:Q.14, A:Q.14, A:R.35, A:R.35 Salt bridges: A:R.35

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain D: V.88, E.129, N.180, E.189, F.190, V.191, K.194, V.211, L.212, G.213, N.214, A.217, R.219, V.253, F.295, R.297, E.300 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:E.129, D:E.129, D:N.180, D:E.189, D:V.191, D:K.194, D:G.213, D:N.214, D:R.219, D:R.297, D:R.297 Salt bridges: D:R.297, D:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niwa, H. et al., Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5. To be Published

Release Date

2008-03-18

Peptides

GDP-D-mannose dehydratase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GDP-D-mannose dehydratase

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