- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 5 residues within 4Å:- Chain A: P.68, G.193, P.194, N.195, K.196
Ligand excluded by PLIPCL.16: 5 residues within 4Å:- Chain B: P.68, G.193, P.194, N.195, K.196
Ligand excluded by PLIPCL.29: 5 residues within 4Å:- Chain C: P.68, G.193, P.194, N.195, K.196
Ligand excluded by PLIPCL.40: 5 residues within 4Å:- Chain D: P.68, G.193, P.194, N.195, K.196
Ligand excluded by PLIP- 4 x ALA: ALANINE(Non-covalent)
ALA.6: 9 residues within 4Å:- Chain A: G.16, Y.94, T.145, P.146, R.335, R.344
- Chain B: T.247
- Ligands: PXL.7, GOL.10
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.16, A:Y.94
- Water bridges: A:T.145, A:T.145
- Salt bridges: A:R.344
ALA.17: 9 residues within 4Å:- Chain A: T.247
- Chain B: G.16, Y.94, T.145, P.146, R.335, R.344
- Ligands: PXL.18, GOL.21
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:G.16, B:Y.94, B:Y.94
- Water bridges: B:T.145, B:T.145, A:T.247
- Salt bridges: B:R.344
ALA.30: 9 residues within 4Å:- Chain C: G.16, Y.94, T.145, P.146, R.335, R.344
- Chain D: T.247
- Ligands: PXL.31, GOL.34
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.16, C:Y.94
- Salt bridges: C:R.344
ALA.41: 9 residues within 4Å:- Chain C: T.247
- Chain D: G.16, Y.94, T.145, P.146, R.335, R.344
- Ligands: PXL.42, GOL.45
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.16, D:Y.94
- Water bridges: D:K.196
- Salt bridges: D:R.344
- 4 x PXL: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE(Non-covalent)
PXL.7: 12 residues within 4Å:- Chain A: E.67, P.68, V.69, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: ALA.6
8 PLIP interactions:7 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.94, A:V.172, A.6
- Hydrogen bonds: A:E.67, A:T.145, A:T.145, A:K.196
- pi-Stacking: A:Y.94
PXL.18: 13 residues within 4Å:- Chain B: E.67, P.68, V.69, L.72, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: ALA.17
9 PLIP interactions:7 interactions with chain B, 1 Ligand-Ligand interactions, 1 interactions with chain A- Hydrophobic interactions: B:Y.94, B:V.172, A.17
- Hydrogen bonds: B:E.67, B:T.145, B:T.145, B:K.196
- pi-Stacking: B:Y.94
- Water bridges: A:T.247
PXL.31: 12 residues within 4Å:- Chain C: E.67, P.68, V.69, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: ALA.30
8 PLIP interactions:6 interactions with chain C, 1 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:Y.94, C:V.172, A.30
- Hydrogen bonds: C:E.67, C:T.145, C:K.196
- pi-Stacking: C:Y.94
- Water bridges: D:T.247
PXL.42: 13 residues within 4Å:- Chain D: E.67, P.68, V.69, L.72, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: ALA.41
8 PLIP interactions:6 interactions with chain D, 1 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: D:Y.94, D:V.172, A.41
- Hydrogen bonds: D:E.67, D:T.145, D:K.196
- pi-Stacking: D:Y.94
- Water bridges: C:T.247
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 3 residues within 4Å:- Chain A: S.297, D.298, S.299
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain A: V.93, Y.94, G.97, W.101, R.335
Ligand excluded by PLIPGOL.10: 7 residues within 4Å:- Chain A: S.333, G.334, R.335, R.344
- Chain B: Y.34, Y.36
- Ligands: ALA.6
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain A: I.11, T.12, N.19, P.350, T.351, Y.356
Ligand excluded by PLIPGOL.19: 3 residues within 4Å:- Chain B: S.297, D.298, S.299
Ligand excluded by PLIPGOL.20: 5 residues within 4Å:- Chain B: V.93, Y.94, G.97, W.101, R.335
Ligand excluded by PLIPGOL.21: 7 residues within 4Å:- Chain A: Y.34, Y.36
- Chain B: S.333, G.334, R.335, R.344
- Ligands: ALA.17
Ligand excluded by PLIPGOL.22: 6 residues within 4Å:- Chain B: I.11, T.12, N.19, P.350, T.351, Y.356
Ligand excluded by PLIPGOL.23: 8 residues within 4Å:- Chain A: V.69, W.101
- Chain B: A.226, S.227, M.228, D.233, P.245, F.246
Ligand excluded by PLIPGOL.24: 3 residues within 4Å:- Chain B: K.218, R.225, V.232
Ligand excluded by PLIPGOL.32: 3 residues within 4Å:- Chain C: S.297, D.298, S.299
Ligand excluded by PLIPGOL.33: 5 residues within 4Å:- Chain C: V.93, Y.94, G.97, W.101, R.335
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain C: S.333, G.334, R.335, R.344
- Chain D: Y.34, Y.36
- Ligands: ALA.30
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain C: I.11, T.12, N.19, P.350, T.351, Y.356
Ligand excluded by PLIPGOL.43: 3 residues within 4Å:- Chain D: S.297, D.298, S.299
Ligand excluded by PLIPGOL.44: 5 residues within 4Å:- Chain D: V.93, Y.94, G.97, W.101, R.335
Ligand excluded by PLIPGOL.45: 7 residues within 4Å:- Chain C: Y.34, Y.36
- Chain D: S.333, G.334, R.335, R.344
- Ligands: ALA.41
Ligand excluded by PLIPGOL.46: 6 residues within 4Å:- Chain D: I.11, T.12, N.19, P.350, T.351, Y.356
Ligand excluded by PLIPGOL.47: 8 residues within 4Å:- Chain C: V.69, W.101
- Chain D: A.226, S.227, M.228, D.233, P.245, F.246
Ligand excluded by PLIPGOL.48: 3 residues within 4Å:- Chain D: K.218, R.225, V.232
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshikane, Y. et al., Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099. J.Biol.Chem. (2008)
- Release Date
- 2007-11-06
- Peptides
- Aspartate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ALA: ALANINE(Non-covalent)
- 4 x PXL: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE(Non-covalent)
- 20 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshikane, Y. et al., Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099. J.Biol.Chem. (2008)
- Release Date
- 2007-11-06
- Peptides
- Aspartate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B