SMTL ID : 2za1.1

Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with orotidine 5'-monophosphate from P.falciparum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x OMP: OROTIDINE-5'-MONOPHOSPHATE(Non-covalent)

OMP.1: 19 residues within 4Å: Chain A: D.23, K.102, N.104, D.136, K.138, L.191, T.194, T.195, V.240, P.264, G.267, A.268, Q.269, N.291, G.293, R.294 Chain B: D.141, I.142, T.145 24 PLIP interactions: 22 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.240, A:P.264 Hydrogen bonds: A:D.23, A:N.104, A:D.136, A:K.138, A:T.195, A:T.195, A:T.195, A:G.267, A:Q.269, A:G.293, A:R.294, B:D.141, B:T.145 Water bridges: A:D.23, A:G.265, A:G.265, A:G.265, A:I.266, A:R.294 Salt bridges: A:K.102, A:K.138, A:R.294 OMP.2: 19 residues within 4Å: Chain A: D.141, I.142 Chain B: D.23, K.102, N.104, D.136, K.138, T.163, T.194, T.195, V.240, P.264, I.266, G.267, Q.269, N.291, I.292, G.293, R.294 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.240, B:P.264 Hydrogen bonds: B:D.23, B:K.102, B:N.104, B:K.138, B:T.195, B:T.195, B:G.267, B:G.293, B:R.294, A:D.141 Water bridges: B:N.104, B:D.136, B:G.265, B:R.294, B:R.294 Salt bridges: B:K.102, B:K.138, B:R.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokuoka, K. et al., Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase. J.BIOCHEM.(TOKYO) (2008)

Release Date

2007-12-04

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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