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SMTL ID : 2za3.1
Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with uridine 5'-monophosphate from P.falciparum
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.65 Å
Oligo State
homo-dimer
Ligands
2 x
U5P
:
URIDINE-5'-MONOPHOSPHATE
(Non-covalent)
U5P.1:
19 residues within 4Å:
Chain A:
D.23
,
K.102
,
N.104
,
F.107
,
D.136
,
K.138
,
T.194
,
T.195
,
P.264
,
A.268
,
Q.269
,
N.291
,
I.292
,
G.293
,
R.294
Chain B:
D.141
,
I.142
,
T.145
,
M.168
19
PLIP interactions
:
2 interactions with chain B
,
17 interactions with chain A
Hydrogen bonds:
B:T.145
,
B:T.145
,
A:K.102
,
A:N.104
,
A:K.138
,
A:K.138
,
A:T.195
,
A:T.195
,
A:T.195
,
A:Q.269
,
A:N.291
,
A:G.293
,
A:R.294
Water bridges:
A:G.265
,
A:G.265
,
A:I.266
,
A:Q.269
,
A:A.295
Salt bridges:
A:R.294
U5P.2:
17 residues within 4Å:
Chain A:
D.141
,
I.142
,
T.145
,
M.168
Chain B:
D.23
,
K.102
,
N.104
,
F.107
,
D.136
,
T.194
,
T.195
,
P.264
,
Q.269
,
N.291
,
I.292
,
G.293
,
R.294
21
PLIP interactions
:
19 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:P.264
Hydrogen bonds:
B:K.102
,
B:N.104
,
B:T.195
,
B:T.195
,
B:Q.269
,
B:N.291
,
B:G.293
,
B:R.294
,
A:D.141
,
A:T.145
Water bridges:
B:D.23
,
B:N.104
,
B:G.265
,
B:G.265
,
B:G.265
,
B:G.265
,
B:A.268
,
B:R.294
,
B:A.295
Salt bridges:
B:R.294
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Tokuoka, K. et al., Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase. J.Biochem.(Tokyo) (2008)
Release Date
2007-12-04
Peptides
Orotidine 5'-phosphate decarboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Orotidine 5'-phosphate decarboxylase
Related Entries With Identical Sequence
2f84.1
|
2q8l.1
|
2za1.1
|
2za2.1
|
2zcg.1
|
3vi2.1
|
6dsq.1
|
6dsr.1
|
6dss.1
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