SMTL ID : 2zac.1

Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x LGU- BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid

LGU-BEM-BEM.1: 16 residues within 4Å: Chain A: K.15, Q.17, E.25, T.59, A.60, N.61, S.62, R.66, R.70, Q.109, H.111, N.119, P.122, Y.198, K.200, F.204 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.61, A:R.66, A:R.66, A:Q.109, A:N.119, A:N.119, A:Q.17, A:E.25 Salt bridges: A:R.66, A:H.111, A:K.200, A:K.15, A:K.15, A:R.70 Water bridges: A:K.15, A:S.78, A:Y.198

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.8, F.9, D.45, G.46, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.220 Water bridges: A:N.8, A:G.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogura, K. et al., Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1. To be Published

Release Date

2008-05-27

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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