SMTL ID : 2zb1.1

Crystal structure of P38 in complex with biphenyl amide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GK4: N-(cyclopropylmethyl)-2'-methyl-5'-(5-methyl-1,3,4-oxadiazol-2-yl)biphenyl-4-carboxamide(Non-covalent)

GK4.1: 16 residues within 4Å: Chain A: Y.35, A.51, K.53, E.71, L.75, I.84, T.106, H.107, M.109, A.111, D.112, A.157, L.167, D.168, F.169, L.171 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.35, A:Y.35, A:Y.35, A:A.51, A:E.71, A:L.75, A:L.75, A:T.106, A:L.167, A:L.167, A:L.171 Hydrogen bonds: A:M.109, A:D.168, A:F.169

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.69, S.326, F.327 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.69, A:R.73, A:S.326 Water bridges: A:F.327 GOL.3: 8 residues within 4Å: Chain A: M.78, K.79, H.80, V.83, I.84, G.85, H.107, P.351 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.80, A:H.80, A:G.85, A:G.85 Water bridges: A:L.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Angell, R.M. et al., Biphenyl amide p38 kinase inhibitors 1: Discovery and binding mode. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-01-15

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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