SMTL ID : 2zkc.1

Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol Z

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x BPZ: 4,4'-cyclohexane-1,1-diyldiphenol(Non-covalent)

BPZ.1: 15 residues within 4Å: Chain A: L.53, C.54, L.56, A.57, E.60, M.91, L.94, R.101, Y.111, L.130, N.131, I.134, A.216, F.220, F.235 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.53, A:L.56, A:A.57, A:L.94, A:Y.111, A:I.134, A:A.216, A:F.220, A:F.220, A:F.220, A:F.235, A:F.235 Hydrogen bonds: A:L.94, A:R.101 Water bridges: A:R.101 pi-Stacking: A:Y.111 BPZ.4: 15 residues within 4Å: Chain B: L.53, C.54, L.56, A.57, E.60, M.91, L.94, R.101, Y.111, L.130, N.131, I.134, A.216, F.220, F.235 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.53, B:L.56, B:A.57, B:L.94, B:Y.111, B:I.134, B:A.216, B:F.220, B:F.220, B:F.220, B:F.235, B:F.235 Hydrogen bonds: B:L.94, B:R.101, B:Y.111 Water bridges: B:R.101 pi-Stacking: B:Y.111

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: K.17, P.18, Y.19, N.20, D.186, Y.187, G.190, Q.191 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.17, A:N.20, A:D.186, A:Y.187, A:G.190 GOL.3: 5 residues within 4Å: Chain A: E.30, K.33, Y.100, R.101, F.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.101 Water bridges: A:E.30 GOL.5: 8 residues within 4Å: Chain B: K.17, P.18, Y.19, N.20, D.186, Y.187, G.190, Q.191 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.17, B:N.20, B:D.186, B:Y.187, B:G.190 GOL.6: 5 residues within 4Å: Chain B: E.30, K.33, Y.100, R.101, F.151 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.30, B:R.101 Water bridges: B:E.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsushima, A. et al., Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol Z. To be Published

Release Date

2009-03-17

Peptides

Estrogen-related receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Estrogen-related receptor gamma

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