SMTL ID : 2zm7.2 (1 other biounit)

Structure of 6-Aminohexanoate-dimer Hydrolase, S112A/G181D Mutant Complexed with 6-Aminohexanoate-dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: A.124, D.127, E.128, K.246, R.293, V.294 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.127, A:E.128, A:V.294 Water bridges: A:K.246 Salt bridges: A:K.246 SO4.2: 1 residues within 4Å: Chain A: R.205 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.205, A:R.205 Salt bridges: A:R.205 SO4.3: 3 residues within 4Å: Chain A: R.107, R.251, D.252 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.252, A:D.252 Water bridges: A:R.107, A:D.252 Salt bridges: A:R.107, A:R.251 SO4.4: 2 residues within 4Å: Chain A: R.274, R.278 9 PLIP interactions: 9 interactions with chain A Water bridges: A:D.250, A:R.274, A:R.274, A:R.278, A:R.278, A:R.278, A:R.278 Salt bridges: A:R.274, A:R.278

2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)

ACA.5: 9 residues within 4Å: Chain A: A.112, Y.170, Y.215, F.317, W.331, I.343, I.345, H.375 Ligands: ACA.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.331 Hydrogen bonds: A:Y.170, A:I.345 Water bridges: A:D.370 Salt bridges: A:H.375 ACA.6: 11 residues within 4Å: Chain A: M.111, A.112, Y.170, D.181, W.186, Y.215, F.264, H.266, G.344, I.345 Ligands: ACA.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.112, A:Y.170, A:I.345 Hydrogen bonds: A:A.112, A:H.266, A:I.345 Water bridges: A:S.217

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.7: 2 residues within 4Å: Chain A: R.99, G.101 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.99, A:R.99 Salt bridges: A:R.99 MES.8: 6 residues within 4Å: Chain A: Q.69, L.70, P.71, D.72, R.76, D.384 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.72 Water bridges: A:R.387 Salt bridges: A:R.76, A:D.384

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 6 residues within 4Å: Chain A: L.155, D.159, R.302, G.306, T.327, R.328 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.159, A:R.302, A:G.306, A:T.327, A:R.328, A:R.328 GOL.10: 4 residues within 4Å: Chain A: G.211, E.212, E.310, A.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.310 GOL.11: 3 residues within 4Å: Chain A: D.106, R.107, R.251 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.107, A:R.107, A:R.107, A:R.251, A:R.251 Water bridges: A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawashima, Y. et al., Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold. Febs J. (2009)

Release Date

2009-04-07

Peptides

6-aminohexanoate-dimer hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

6-aminohexanoate-dimer hydrolase

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