SMTL ID : 2zpn.2 (3 other biounits)

The crystal structure of Saccharomyces cerevisiae Atg8- Atg19(412-415) complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x TRP- GLU- GLU- LEU: Saccharomyces cerevisiae Atg19(412-415)(Non-covalent)

TRP-GLU-GLU-LEU.1: 14 residues within 4Å: Chain A: E.20, I.24, R.31, V.34, K.49, K.51, Y.52, L.53, V.54, P.55, F.63, V.66, R.70, F.107 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.24, A:K.51, A:K.51, A:Y.52, A:L.53, A:V.54, A:F.63, A:V.66, A:F.107 Hydrogen bonds: A:K.51, A:L.53, A:L.53 Salt bridges: A:R.31, A:K.49, A:R.70

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: K.41, S.42, D.43, S.113, G.114, E.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.43, A:G.114, A:E.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noda, N.N. et al., Structural basis of target recognition by Atg8/LC3 during selective autophagy. Genes Cells (2008)

Release Date

2008-12-09

Peptides

Autophagy-related protein 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Autophagy-related protein 8

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