SMTL ID : 3vxw.1

Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x SER- TRP- GLN- ALA- ILE- GLN: Peptide from Autophagy-related protein 32(Non-covalent)

SER-TRP-GLN-ALA-ILE-GLN.1: 12 residues within 4Å: Chain A: E.20, R.31, P.33, K.49, K.51, Y.52, L.53, P.55, F.63, V.66, R.70, F.107 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.33, A:K.49, A:K.51, A:K.51, A:L.53, A:F.63, A:V.66, A:V.66, A:F.107 Hydrogen bonds: A:R.31, A:R.31, A:K.51, A:K.51, A:L.53, A:L.53, A:R.70

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.27, F.28, K.29, N.30, R.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.29, A:N.30, A:N.30 SO4.3: 4 residues within 4Å: Chain A: F.8, Y.12, R.50, K.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.50 Salt bridges: A:R.50, A:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kondo-Okamoto, N. et al., Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy. J.Biol.Chem. (2012)

Release Date

2012-10-03

Peptides

Autophagy-related protein 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Autophagy-related protein 8

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