SMTL ID : 2zpu.1

Crystal Structure of Modified Serine Racemase from S.pombe.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.208, G.212, D.214 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.208, A:G.212, A:D.214, H2O.1, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain B: E.208, G.212, D.214 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.208, B:G.212, B:D.214, H2O.8, H2O.8, H2O.8

2 x PDD: N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE(Covalent)

PDD.2: 21 residues within 4Å: Chain A: F.56, K.57, S.81, S.82, G.83, N.84, H.85, P.151, Y.152, C.181, L.182, G.183, G.184, G.185, G.186, L.187, G.236, E.281, T.283, S.308, G.309 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:K.57, A:P.151, A:Y.152, A:E.281 Hydrogen bonds: A:S.82, A:G.83, A:N.84, A:N.84, A:H.85, A:G.183, A:G.184, A:G.185, A:G.186, A:L.187, A:S.308 Water bridges: A:K.57, A:S.82, A:K.112, A:L.188 Salt bridges: A:K.57, A:K.57 pi-Stacking: A:F.56 PDD.4: 21 residues within 4Å: Chain B: F.56, K.57, S.81, S.82, G.83, N.84, H.85, P.151, Y.152, C.181, L.182, G.183, G.184, G.185, G.186, L.187, G.236, E.281, T.283, S.308, G.309 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:K.57, B:P.151, B:Y.152, B:E.281 Hydrogen bonds: B:S.82, B:G.83, B:N.84, B:N.84, B:H.85, B:G.183, B:G.184, B:G.185, B:G.186, B:L.187, B:S.308 Water bridges: B:K.57, B:S.82, B:K.112, B:L.188 Salt bridges: B:K.57, B:K.57 pi-Stacking: B:F.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamauchi, T. et al., Serine racemase with catalytically active lysinoalanyl residue. J.Biochem. (2009)

Release Date

2009-04-28

Peptides

Uncharacterized protein C320.14: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein C320.14

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