- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PDD: N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE(Covalent)
- 2 x SER: SERINE(Non-covalent)
SER.2: 12 residues within 4Å:- Chain A: S.81, S.82, R.128, R.133, P.151, Y.152, D.235, G.236, A.237, Q.238, T.239
- Ligands: PDD.1
9 PLIP interactions:7 interactions with chain A, 2 Ligand-Ligand interactions- Hydrogen bonds: A:S.82, A:R.128, A:D.235, A:G.236, A:Q.238, S.2, S.2
- Water bridges: A:Y.126
- Salt bridges: A:R.133
SER.5: 12 residues within 4Å:- Chain B: S.81, S.82, R.128, R.133, P.151, Y.152, D.235, G.236, A.237, Q.238, T.239
- Ligands: PDD.4
8 PLIP interactions:6 interactions with chain B, 2 Ligand-Ligand interactions- Hydrogen bonds: B:S.82, B:R.128, B:D.235, B:G.236, B:Q.238, S.5, S.5
- Salt bridges: B:R.133
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: E.208, G.212, D.214, A.237
6 PLIP interactions:3 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.208, A:G.212, A:D.214, H2O.1, H2O.1, H2O.3
MG.6: 4 residues within 4Å:- Chain B: E.208, G.212, D.214, A.237
6 PLIP interactions:3 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.208, B:G.212, B:D.214, H2O.5, H2O.5, H2O.7
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goto, M. et al., Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe. J.Biol.Chem. (2009)
- Release Date
- 2009-07-28
- Peptides
- Uncharacterized protein C320.14: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PDD: N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE(Covalent)
- 2 x SER: SERINE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goto, M. et al., Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe. J.Biol.Chem. (2009)
- Release Date
- 2009-07-28
- Peptides
- Uncharacterized protein C320.14: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A