SMTL ID : 2zsm.1 (1 other biounit)

Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix, hexagonal form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.1: 15 residues within 4Å: Chain A: S.120, G.121, T.122, Y.148, H.149, G.150, E.210, N.215, D.243, V.245, V.246, K.271 Chain B: G.302, T.303, F.304 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:E.210 Hydrogen bonds: A:G.121, A:T.122, A:T.122, A:N.215, A:N.215, A:K.271, B:T.303, B:T.303, B:T.303 Water bridges: A:T.122, A:T.122, B:F.304 pi-Stacking: A:Y.148 PMP.3: 15 residues within 4Å: Chain A: G.302, T.303, F.304 Chain B: S.120, G.121, T.122, Y.148, H.149, G.150, E.210, N.215, D.243, V.245, V.246, K.271 16 PLIP interactions: 5 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:T.303, A:T.303, A:T.303, B:G.121, B:T.122, B:T.122, B:T.122, B:N.215, B:N.215, B:K.271 Water bridges: A:N.119, A:F.304, B:S.120, B:Y.148 Hydrophobic interactions: B:E.210 pi-Stacking: B:Y.148

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: H.72, K.73 Chain B: G.88, W.89, L.90 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: G.88, W.89, L.90 Chain B: H.72, K.73 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizutani, H. et al., Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix. To be Published

Release Date

2008-10-21

Peptides

Glutamate-1-semialdehyde 2,1-aminomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutamate-1-semialdehyde 2,1-aminomutase

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