SMTL ID : 2zt5.1

Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with ATP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)

B4P.1: 20 residues within 4Å: Chain A: D.146, R.159, D.193, L.226, R.277, E.279, I.287, R.288, V.289, F.292, M.294, N.381, E.382, E.403, I.404, V.405, G.406, S.524, G.526, R.529 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:R.277, A:E.279, A:E.279, A:V.289, A:N.381, A:E.403, A:E.403, A:E.403, A:S.524, A:G.526, A:R.529 Water bridges: A:R.159, A:R.159, A:R.529 Salt bridges: A:R.159, A:R.159, A:R.277, A:R.277, A:R.277, A:R.288, A:R.288, A:R.529 pi-Stacking: A:F.292 pi-Cation interactions: A:R.529, A:R.529 B4P.2: 20 residues within 4Å: Chain B: D.146, R.159, D.193, L.226, R.277, E.279, I.287, R.288, V.289, F.292, M.294, N.381, E.382, E.403, I.404, V.405, G.406, S.524, G.526, R.529 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:R.277, B:E.279, B:E.279, B:V.289, B:N.381, B:E.403, B:E.403, B:E.403, B:S.524, B:G.526, B:R.529 Water bridges: B:R.159, B:R.159, B:R.529 Salt bridges: B:R.159, B:R.159, B:R.277, B:R.277, B:R.277, B:R.288, B:R.288, B:R.529 pi-Stacking: B:F.292 pi-Cation interactions: B:R.529, B:R.529

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, R.T. et al., Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis. To be Published

Release Date

2009-08-25

Peptides

Glycyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycyl-tRNA synthetase

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