- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.32 Å
- Oligo State
- monomer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 4 x RAM: alpha-L-rhamnopyranose(Non-covalent)
RAM.11: 6 residues within 4Å:- Chain A: N.495, G.496, T.497, K.498, Y.558
- Ligands: RAM.12
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.495, A:T.497, A:T.497, A:Y.558, A:Y.558
- Water bridges: A:N.495
RAM.12: 6 residues within 4Å:- Chain A: N.115, D.135, N.494, N.495, G.496
- Ligands: RAM.11
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.115, A:D.135, A:N.495, A:N.495, A:G.496
- Water bridges: A:S.113, A:S.137
RAM.13: 6 residues within 4Å:- Chain A: T.103, P.105, Y.110, D.150, K.170, R.218
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:Y.110, A:R.218, A:R.218
- Water bridges: A:D.150, A:D.150, A:D.150, A:N.167, A:K.170, A:K.170, A:K.170, A:K.170
- Salt bridges: A:K.170, A:R.218
RAM.14: 6 residues within 4Å:- Chain A: K.170, G.201, K.203, V.209, A.213, N.214
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:K.170, A:G.201, A:A.213
- Water bridges: A:N.167, A:K.170, A:K.170, A:A.213
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ochiai, A. et al., Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases. J.Biol.Chem. (2009)
- Release Date
- 2009-02-03
- Peptides
- YesW protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.32 Å
- Oligo State
- monomer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 4 x RAM: alpha-L-rhamnopyranose(Non-covalent)
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ochiai, A. et al., Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases. J.Biol.Chem. (2009)
- Release Date
- 2009-02-03
- Peptides
- YesW protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A