SMTL ID : 2zwz.1

alpha-L-fucosidase complexed with inhibitor, Core1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-hexamer

Ligands

6 x ZWZ: (2R,3R,4R,5R,6S)-2-(aminomethyl)-6-methylpiperidine-3,4,5-triol(Non-covalent)

ZWZ.1: 13 residues within 4Å: Chain A: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.32, A:F.290 Hydrogen bonds: A:E.66, A:W.67, A:W.67, A:H.128, A:R.254, A:E.266, A:E.266 ZWZ.2: 13 residues within 4Å: Chain B: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.32, B:F.290 Hydrogen bonds: B:W.67, B:W.67, B:H.128, B:Y.171, B:D.224, B:R.254, B:E.266 ZWZ.3: 13 residues within 4Å: Chain C: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.32, C:F.290 Hydrogen bonds: C:E.66, C:W.67, C:W.67, C:H.128, C:R.254, C:E.266, C:E.266 ZWZ.4: 13 residues within 4Å: Chain D: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:F.32, D:F.290 Hydrogen bonds: D:W.67, D:W.67, D:H.128, D:Y.171, D:D.224, D:R.254, D:E.266 ZWZ.5: 13 residues within 4Å: Chain E: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:F.32, E:F.290 Hydrogen bonds: E:E.66, E:W.67, E:W.67, E:H.128, E:R.254, E:E.266, E:E.266 ZWZ.6: 13 residues within 4Å: Chain F: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:F.32, F:F.290 Hydrogen bonds: F:W.67, F:W.67, F:H.128, F:Y.171, F:D.224, F:R.254, F:E.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H.J. et al., Structural basis of alpha-fucosidase inhibition by iminocyclitols with K(i) values in the micro- to picomolar range. Angew.Chem.Int.Ed.Engl. (2010)

Release Date

2009-12-08

Peptides

Alpha-L-fucosidase, putative: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Alpha-L-fucosidase, putative

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