SMTL ID : 2zyu.1

Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAPS and p-nitrophenyl sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PPS: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE(Non-covalent)

PPS.1: 22 residues within 4Å: Chain A: P.47, K.48, S.49, G.50, T.51, T.52, W.53, K.106, H.108, R.130, S.138, F.142, Y.193, S.227, S.228, F.229, M.232, F.255, M.256, R.257, K.258, G.259 33 PLIP interactions: 33 interactions with chain A Hydrogen bonds: A:K.48, A:S.49, A:G.50, A:T.51, A:T.51, A:T.51, A:T.52, A:T.52, A:R.130, A:S.138, A:Y.193, A:S.227, A:R.257, A:K.258, A:G.259 Water bridges: A:W.53, A:W.53, A:K.106, A:K.106, A:S.138, A:S.138, A:F.229, A:F.229, A:F.255, A:I.260 Salt bridges: A:K.48, A:K.48, A:K.106, A:H.108, A:R.130, A:R.257 pi-Stacking: A:W.53, A:F.229

1 x 4NS: 4-nitrophenyl sulfate(Non-covalent)

4NS.2: 13 residues within 4Å: Chain A: F.21, Y.76, F.81, L.84, I.89, T.90, F.142, A.146, I.148, H.149, M.243, E.247, M.248 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.81, A:L.84, A:L.84 Hydrogen bonds: A:T.90 Water bridges: A:K.106 Salt bridges: A:H.149

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.192, E.194, D.195, K.290, R.292 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.292, A:R.292 Water bridges: A:K.290, A:K.290, A:R.292 GOL.4: 5 residues within 4Å: Chain A: V.13, D.14, V.15, A.25, W.28 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.16, A:W.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teramoto, T. et al., Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate. Biochem.Biophys.Res.Commun. (2009)

Release Date

2009-04-21

Peptides

Tyrosine-ester sulfotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Tyrosine-ester sulfotransferase

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