SMTL ID : 2zyw.1

crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAP and p-nitrophenol, obtained by two-step soaking method

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 18 residues within 4Å: Chain A: K.48, S.49, G.50, T.51, T.52, W.53, R.130, S.138, Y.193, S.227, S.228, F.229, M.232, F.255, M.256, R.257, K.258, G.259 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:K.48, A:S.49, A:G.50, A:T.51, A:T.51, A:T.52, A:T.52, A:T.52, A:S.138, A:Y.193, A:S.227, A:F.255, A:R.257, A:K.258, A:G.259 Water bridges: A:T.51, A:T.51, A:W.53, A:W.53, A:R.130, A:S.138, A:F.229, A:F.229, A:I.260 Salt bridges: A:K.48, A:R.130, A:R.257 pi-Stacking: A:W.53, A:W.53, A:F.229, A:F.229

2 x NPO: P-NITROPHENOL(Non-covalent)

NPO.2: 9 residues within 4Å: Chain A: F.21, F.81, K.106, H.108, F.142, I.148, H.149, M.248 Ligands: NPO.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.81 Hydrogen bonds: A:K.106, A:K.106, A:H.149 Water bridges: A:T.51 pi-Stacking: A:F.142 NPO.3: 8 residues within 4Å: Chain A: Y.76, F.81, L.84, I.89, T.90, M.243, E.247 Ligands: NPO.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.84, A:L.84, A:T.90 Water bridges: A:Y.76, A:F.81, A:T.90, A:E.247

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: F.192, D.195, K.290, F.291, R.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.195, A:R.292, A:R.292 GOL.5: 4 residues within 4Å: Chain A: R.72, D.73, R.78, M.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.72, A:R.72 Water bridges: A:R.78 GOL.6: 4 residues within 4Å: Chain A: S.116, W.119, K.120, Y.186 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.186, A:Y.186 Water bridges: A:W.119, A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teramoto, T. et al., Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate. Biochem.Biophys.Res.Commun. (2009)

Release Date

2009-04-21

Peptides

Tyrosine-ester sulfotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Tyrosine-ester sulfotransferase

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