SMTL ID : 35c8.1

CATALYTIC ANTIBODY 5C8, FAB-INHIBITOR COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NOX: N-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE(Non-covalent)

NOX.1: 15 residues within 4Å: Chain A: H.35, Y.37, L.47, Y.50, H.90, Y.92 Chain B: H.35, A.97, D.99, P.100, G.104, H.105, G.106, D.107, W.109 16 PLIP interactions: 10 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.47, A:L.47, A:Y.50, A:Y.50, A:Y.92, A:Y.92, B:A.97, B:W.109 Water bridges: A:S.51, A:S.57 pi-Stacking: A:H.35 pi-Cation interactions: A:Y.92 Hydrogen bonds: B:H.35, B:D.99 Salt bridges: B:D.99, B:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gruber, K. et al., Structural basis for antibody catalysis of a disfavored ring closure reaction. Biochemistry (1999)

Release Date

1999-03-23

Peptides

IGG 5C8: A
IGG 5C8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IGG 5C8

IGG 5C8

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