SMTL ID : 3a2h.2 (1 other biounit)

Crystal structure of the rat vitamin D receptor ligand binding domain complexed with TEI-9647 and a synthetic peptide containing the NR2 box of DRIP 205

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x TEJ: (1S,3R,5Z,7E,20S,23S)-1,3-dihydroxy-23,26-epoxy-9,10-secocholesta-5,7,10,25(27)-tetraen-26-one(Non-covalent)

TEJ.1: 17 residues within 4Å: Chain A: Y.32, Y.36, V.72, S.75, I.106, I.109, M.110, R.112, S.113, S.116, W.124, C.126, V.138, H.143, L.151, H.235, F.260 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.32, A:W.124, A:V.138, A:V.138, A:L.151 Hydrogen bonds: A:S.75, A:R.112, A:S.116, A:S.116 Salt bridges: A:H.143, A:H.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kakuda, S. et al., Structural basis of the histidine-mediated vitamin D receptor agonistic and antagonistic mechanisms of (23S)-25-dehydro-1alpha-hydroxyvitamin D(3)-26,23-lactone. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-05-26

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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