SMTL ID : 3aun.1

Crystal structure of the rat vitamin D receptor ligand binding domain complexed with YR335 and a synthetic peptide containing the NR2 box of DRIP 205

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YR4: (2R)-2-{4-[3-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)pentan-3-yl]-2-methylphenoxy}butane-1,4-diol(Non-covalent)

YR4.1: 18 residues within 4Å: Chain A: Y.32, Y.36, A.69, L.71, V.72, S.75, I.109, R.112, S.113, S.116, W.124, C.126, Y.133, V.138, H.143, L.147, H.235, L.242 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.32, A:L.71, A:L.71, A:V.72, A:I.109, A:W.124, A:W.124, A:W.124, A:W.124, A:Y.133, A:V.138, A:V.138, A:L.147, A:L.242 Hydrogen bonds: A:S.75, A:R.112, A:S.116, A:S.116, A:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demizu, Y. et al., Design, synthesis and X-ray crystallographic study of new nonsecosteroidal vitamin D receptor ligands. Bioorg.Med.Chem.Lett. (2011)

Release Date

2012-02-15

Peptides

Vitamin D3 receptor: A
DRIP 205 NR2 box peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vitamin D3 receptor

DRIP 205 NR2 box peptide

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