SMTL ID : 3a3u.1

Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 2 residues within 4Å: Chain A: F.149 Ligands: 7PE.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:F.149

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 9 residues within 4Å: Chain A: V.39, K.55, S.57, T.106, T.107, A.108, I.144, H.145, L.176 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.57, A:T.107, A:A.108, A:L.176 Water bridges: A:S.9, A:K.55 Salt bridges: A:K.55, A:H.145

1 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)

7PE.3: 8 residues within 4Å: Chain A: R.148, F.149, Y.151, P.152, R.153, E.225, A.229 Ligands: K.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arai, R. et al., Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8. J.Struct.Biol. (2009)

Release Date

2009-07-14

Peptides

Menaquinone biosynthetic enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menaquinone biosynthetic enzyme

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