SMTL ID : 3a4g.1

Structure of cytochrome P450 vdh from Pseudonocardia autotrophica (trigonal crystal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: F.58, K.65, M.87, I.88, H.95, R.99, L.232, L.233, A.236, G.237, T.240, T.241, P.282, V.283, A.286, P.287, R.289, L.312, F.339, F.340, G.341, I.344, H.345, C.347, L.348, G.349, L.352, A.353 Ligands: PG0.2 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.88, A:L.232, A:L.233, A:A.236, A:P.282, A:L.312, A:F.340, A:F.340, A:L.348, A:L.352, A:A.353 Hydrogen bonds: A:P.287 Water bridges: A:H.345 Salt bridges: A:K.65, A:H.95, A:R.99, A:R.289, A:H.345 Metal complexes: A:C.347, H2O.11

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 7 residues within 4Å: Chain A: I.88, L.232, I.235, A.236, T.240, V.283 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase. J.Biol.Chem. (2010)

Release Date

2010-07-14

Peptides

Vitamin D hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D hydroxylase

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