SMTL ID : 3a7q.1 (2 other biounits)

Structural basis for specific recognition of reelin by its receptors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.324 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: V.11, I.199, N.200 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.199 Hydrogen bonds: A:N.200 NAG.3: 5 residues within 4Å: Chain A: D.223, G.371, N.372, N.376, R.389 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.223, A:N.372 NAG.4: 7 residues within 4Å: Chain A: T.568, S.569, L.570, T.572, N.624, T.626, N.627 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.570, A:N.624, A:N.627

5 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: T.16, D.18, S.50, D.180, N.181 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.16, A:D.18, A:S.50, A:D.180, A:D.180 CA.6: 4 residues within 4Å: Chain A: D.228, E.230, N.257, D.365 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.228, A:E.230, A:N.257, A:D.365, H2O.1 CA.7: 4 residues within 4Å: Chain A: D.382, T.406, D.408, D.529 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.382, A:D.408, A:D.529, A:D.529, H2O.1 CA.8: 5 residues within 4Å: Chain A: N.577, N.579, S.604, L.606, D.712 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.577, A:S.604, A:L.606, A:D.712, H2O.1 CA.10: 6 residues within 4Å: Chain B: W.25, D.28, D.30, D.32, D.38, E.39 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:W.25, B:D.28, B:D.30, B:D.32, B:D.38, B:E.39

1 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: E.452, E.454, R.513, H.515 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.454, A:H.515

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasui, N. et al., Structural Basis for Specific Recognition of Reelin by Its Receptors. Structure (2010)

Release Date

2010-03-23

Peptides

Reelin: A
Low-density lipoprotein receptor-related protein 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reelin

Low-density lipoprotein receptor-related protein 8

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