SMTL ID : 5b4x.2 (1 other biounit)

Crystal structure of the ApoER2 ectodomain in complex with the Reelin R56 fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: T.16, D.18, D.49, S.50, D.180 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.16, A:D.18, A:S.50, A:D.180, A:D.180 CA.2: 4 residues within 4Å: Chain A: D.228, E.230, N.257, D.365 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.228, A:E.230, A:N.257, A:D.365, A:D.365 CA.3: 6 residues within 4Å: Chain A: D.382, T.406, G.407, D.408, D.529, N.530 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.382, A:T.406, A:D.408, A:D.529, A:D.529 CA.4: 5 residues within 4Å: Chain A: N.577, S.604, L.606, D.712, N.713 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.577, A:S.604, A:L.606, A:D.712, A:D.712 CA.6: 6 residues within 4Å: Chain B: W.24, D.27, D.29, D.31, D.37, E.38 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:W.24, B:D.27, B:D.31, B:D.37, B:E.38 CA.7: 7 residues within 4Å: Chain B: W.63, K.64, D.66, E.68, E.70, D.76, E.77 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.66, B:E.68, B:E.70, B:D.76, B:E.77 CA.8: 3 residues within 4Å: Chain B: E.170, D.184, L.185 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.170, B:E.170, B:D.184, B:D.184, B:L.185 CA.9: 7 residues within 4Å: Chain B: D.207, I.208, E.210, N.223, Y.224, G.226, Y.227 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.207, B:I.208, B:E.210, B:Y.224, B:Y.227

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 6 residues within 4Å: Chain A: P.566, S.569, L.570, N.624, T.626, I.690 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.566, A:I.690 Hydrogen bonds: A:L.570, A:T.626 NAG.10: 4 residues within 4Å: Chain B: Q.326, L.327, H.328, N.349 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.326, B:Q.326, B:Q.326, B:H.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirai, H. et al., Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand. To Be Published

Release Date

2017-04-26

Peptides

Reelin: A
Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, isoform CRA_e: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Reelin

Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, isoform CRA_e

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