SMTL ID : 3adr.1 (1 other biounit)

The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.58, H.60, H.63, H.148, D.165 Ligands: ZN.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.58, A:H.60, A:H.148, A:D.165, H2O.4, H2O.6 ZN.2: 5 residues within 4Å: Chain A: D.62, H.63, D.165, H.207 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.62, A:H.63, A:D.165, A:H.207, H2O.4

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.139, M.140, R.141, L.156, D.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.158 Water bridges: A:R.141 EDO.4: 5 residues within 4Å: Chain A: I.64, P.68, L.94, L.115, K.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.64, A:K.117 EDO.5: 3 residues within 4Å: Chain A: G.83, F.84, R.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.150, A:R.150 EDO.6: 6 residues within 4Å: Chain A: K.86, Y.87, S.90, D.92, G.93, K.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.92, A:D.92 Water bridges: A:K.96 EDO.7: 4 residues within 4Å: Chain A: S.8, E.18, G.209, L.210 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.210 Water bridges: A:E.18, A:E.18, A:E.18, A:E.18 EDO.8: 2 residues within 4Å: Chain A: Q.72, V.73 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: M.25, Y.138, V.157, D.158, F.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.158 EDO.10: 2 residues within 4Å: Chain A: E.99, K.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.99, A:K.103

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.11: 7 residues within 4Å: Chain A: Y.170, G.173, V.175, S.212, K.214, I.215, E.218 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.173, A:S.212 Salt bridges: A:E.218, A:E.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimada, A. et al., The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii. Proteins (2010)

Release Date

2010-04-21

Peptides

Putative uncharacterized protein ST1585: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein ST1585

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