SMTL ID : 3adr.2 (1 other biounit)

The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.58, H.60, H.63, H.148, D.165 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.58, A:H.60, A:H.148, A:D.165, H2O.1 ZN.2: 5 residues within 4Å: Chain A: D.62, H.63, D.165, H.207 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.62, A:H.63, A:D.165, A:H.207, H2O.1

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: L.156, D.158, D.159, L.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.158 EDO.4: 5 residues within 4Å: Chain A: E.132, R.139, R.141, L.156, D.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.132, A:E.132, A:D.158, A:D.158 EDO.5: 5 residues within 4Å: Chain A: M.25, Y.138, V.157, D.158, F.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.158, A:D.158 EDO.6: 3 residues within 4Å: Chain A: Q.72, V.73, K.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.75, A:K.75

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.7: 6 residues within 4Å: Chain A: Y.170, G.173, S.212, K.214, I.215, E.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.170, A:Y.170, A:S.212 Salt bridges: A:K.214, A:E.218, A:E.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimada, A. et al., The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii. Proteins (2010)

Release Date

2010-04-21

Peptides

Putative uncharacterized protein ST1585: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative uncharacterized protein ST1585

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