SMTL ID : 3alj.1

Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, reduced form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, S.43, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, Y.270, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:L.179, A:Y.270, A:P.295, A:P.295 Hydrogen bonds: A:G.19, A:A.22, A:K.42, A:K.42, A:Y.54, A:Y.54, A:R.106, A:R.106, A:E.129, A:A.130, A:A.130, A:V.286, A:D.288, A:G.300, A:A.301, A:G.302 Water bridges: A:G.19, A:G.20, A:G.23, A:E.41, A:S.43, A:G.157, A:K.161, A:R.181, A:R.181, A:D.288, A:D.288, A:D.288, A:D.288, A:A.289, A:Q.299 pi-Cation interactions: A:R.106

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 4 residues within 4Å: Chain A: Y.270, C.294, A.347 Ligands: GOL.7 No protein-ligand interaction detected (PLIP) BME.3: 8 residues within 4Å: Chain A: N.58, Q.299, C.303, V.306, I.335, T.336, A.365, Y.368 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.58

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: K.169, Q.170, D.171, K.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.169 Water bridges: A:Q.170, A:D.171 GOL.5: 4 residues within 4Å: Chain A: D.171, T.272, K.274, Q.340 No protein-ligand interaction detected (PLIP) GOL.6: 4 residues within 4Å: Chain A: W.85, N.88, W.196, F.251 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.88 GOL.7: 7 residues within 4Å: Chain A: R.211, Y.270, C.294, P.295, A.296, A.347 Ligands: BME.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.211, A:R.211, A:A.296 Water bridges: A:A.347 GOL.8: 6 residues within 4Å: Chain A: L.73, Q.74, G.75, S.76, N.218, E.219 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.74, A:G.75, A:E.219, A:E.219 GOL.9: 6 residues within 4Å: Chain A: H.57, L.60, R.61, E.64, L.69, P.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.60, A:E.64 GOL.10: 3 residues within 4Å: Chain A: E.364, R.367, Y.375 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.364, A:R.367, A:R.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobayashi, J. et al., Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase. To be Published

Release Date

2011-08-10

Peptides

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

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