SMTL ID : 4jy2.1 (1 other biounit)

Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, native and unliganded form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, Y.270, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 Ligands: GOL.8 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:L.179, A:Y.270, A:P.295 Hydrogen bonds: A:G.19, A:G.19, A:A.22, A:K.42, A:K.42, A:Y.54, A:Y.54, A:R.106, A:R.106, A:A.130, A:A.130, A:D.288, A:G.300, A:A.301, A:G.302 Water bridges: A:G.20, A:F.21, A:F.21, A:G.23, A:D.156, A:D.156, A:G.157, A:V.158, A:R.181, A:Y.223, A:D.288, A:D.288, A:D.288, A:A.289, A:Q.299 pi-Cation interactions: A:R.106

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 6 residues within 4Å: Chain A: W.173, S.175, Y.270, T.272, C.294, A.347 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.176

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.93, E.94, T.95, F.96, N.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.93, A:T.95, A:N.97, A:N.97 Water bridges: A:F.96, A:G.98 GOL.4: 2 residues within 4Å: Chain A: N.97, P.378 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.97 GOL.5: 3 residues within 4Å: Chain A: E.364, R.367, Y.375 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.364, A:R.367, A:R.367 GOL.6: 5 residues within 4Å: Chain A: R.13, E.15, D.36, V.37, R.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.37 GOL.7: 1 residues within 4Å: Chain A: A.231 No protein-ligand interaction detected (PLIP) GOL.8: 7 residues within 4Å: Chain A: Y.82, R.211, L.213, P.295, A.296, A.298 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.82, A:Y.82, A:R.211, A:A.296 Water bridges: A:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobayashi, J. et al., Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase. To be Published

Release Date

2014-04-02

Peptides

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

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