SMTL ID : 3aot.1

Crystal structure of juvenile hormone binding protein from silkworm in its apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 4 residues within 4Å: Chain A: N.66, N.68, V.100, D.102 No protein-ligand interaction detected (PLIP) PG4.2: 8 residues within 4Å: Chain A: T.70, D.96, L.97, D.121, T.122, N.123, E.158, K.160 No protein-ligand interaction detected (PLIP) PG4.3: 4 residues within 4Å: Chain A: I.53, A.54, P.55, A.58 No protein-ligand interaction detected (PLIP) PG4.4: 9 residues within 4Å: Chain A: K.29, T.30, I.39, W.40, I.42, Q.75, V.206, N.209, I.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.30, A:I.42, A:Q.75, A:N.209 PG4.5: 7 residues within 4Å: Chain A: S.78, D.79, Q.81, K.92, I.125, R.129, E.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.92, A:E.154 Water bridges: A:R.129

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 6 residues within 4Å: Chain A: Q.81, M.82, D.83, T.88, V.89, L.90 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: C.153, E.154, Q.192, C.196 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.154, A:Q.192 Water bridges: A:I.156, A:A.193 PEG.8: 3 residues within 4Å: Chain A: F.80, Y.130, F.144 No protein-ligand interaction detected (PLIP) PEG.9: 6 residues within 4Å: Chain A: S.113, F.114, T.115, D.166, L.167, A.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.115, A:D.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, R. et al., Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori. Sci Rep (2011)

Release Date

2011-10-12

Peptides

Hemolymph juvenile hormone binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hemolymph juvenile hormone binding protein

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