SMTL ID : 3aur.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2beta-methyl-19-norvitamin D3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x CA9: (1R,2S,3R)-5-[2-[(1R,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-7a-methyl-1,2,3,3a,6,7-hexahydroinden-4-yl]ethynyl]-2-methyl-cyclohex-4-ene-1,3-diol(Non-covalent)

CA9.1: 19 residues within 4Å: Chain A: Y.30, Y.34, F.37, L.63, L.69, V.70, S.73, I.104, R.110, S.111, S.114, W.122, C.124, V.136, H.141, L.145, L.149, H.233, Y.237 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.30, A:F.37, A:L.63, A:L.69, A:V.70, A:I.104, A:W.122, A:W.122, A:W.122, A:V.136, A:L.145, A:L.149 Hydrogen bonds: A:R.110, A:R.110, A:S.114, A:S.114, A:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sawada, D. et al., Development of 14-epi-19-nortachysterol and its unprecedented binding configuration for the human vitamin D receptor. J.Am.Chem.Soc. (2011)

Release Date

2011-09-14

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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