SMTL ID : 4itf.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1alpha,25-Dihydroxy-2alpha-[2-(1H-tetrazole-1-yl)ethyl]vitamin D3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

monomer

Ligands

1 x TFY: (1R,2S,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-2-[2-(1,2,3,4-tetrazol-1-yl)ethyl]cyclohexane-1,3-diol(Non-covalent)

TFY.1: 23 residues within 4Å: Chain A: T.29, Y.30, D.31, Y.34, F.37, L.63, L.69, V.70, Y.72, S.73, K.76, I.107, R.110, S.111, S.114, W.122, C.124, V.136, H.141, L.145, L.149, H.233, V.254 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.30, A:F.37, A:L.63, A:L.69, A:I.107, A:W.122, A:V.136, A:V.136, A:L.145, A:L.149, A:V.254 Hydrogen bonds: A:Y.30, A:Y.30, A:D.31, A:S.73, A:R.110, A:R.110, A:S.114, A:H.141 pi-Stacking: A:Y.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsuo, M. et al., Synthesis of 2 alpha-heteroarylalkyl active vitamin d3 with therapeutic effect on enhancing bone mineral density in vivo. ACS MED.CHEM.LETT. (2013)

Release Date

2014-01-22

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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