SMTL ID : 3ave.1

Crystal Structure of the Fucosylated Fc Fragment from Human Immunoglobulin G1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 14 residues within 4Å: Chain A: F.17, F.19, K.22, T.36, V.40, D.41, Q.71, Y.72, N.73, T.75, R.77, K.110 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.72 Hydrogen bonds: A:R.77, A:K.22, A:K.22 NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 14 residues within 4Å: Chain B: F.17, F.19, K.22, T.36, V.38, V.40, D.41, Q.71, Y.72, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.72 Hydrogen bonds: B:R.77, B:K.22, B:K.22 Water bridges: B:T.36, B:T.36

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 1 residues within 4Å: Chain A: H.44 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.44, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsumiya, S. et al., Corrigendum to "Structural Comparison of Fucosylated and Nonfucosylated Fc Fragments of Human Immunoglobulin G1" [J. Mol. Biol. 386/3 (2007) 767-779]. J.Mol.Biol. (2011)

Release Date

2011-04-06

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region

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