SMTL ID : 3axe.1

The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in complex with cellotetraose (cellobiose density was observed)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 12 residues within 4Å: Chain A: E.11, F.40, Y.42, N.44, E.47, W.54, R.137, N.139, Y.203, T.204, F.205 Ligands: TRS.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.44, A:R.137, A:R.137 Water bridges: A:N.44, A:N.44, A:G.45, A:Y.203

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 10 residues within 4Å: Chain A: V.36, S.38, F.40, E.56, D.58, E.60, N.139, W.141, F.205 Ligands: BGC-BGC.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.38, A:S.38, A:E.56, A:E.60, A:N.139

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: F.152, E.154 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:F.152, A:E.154, H2O.1, H2O.1, H2O.3 CA.4: 3 residues within 4Å: Chain A: N.164, N.189, G.222 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.164, A:N.189, A:G.222, H2O.1, H2O.2 CA.5: 2 residues within 4Å: Chain A: K.200, D.202 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:K.200, H2O.3, H2O.7, H2O.7, H2O.7 CA.6: 1 residues within 4Å: Chain A: D.185 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.185, A:D.185, H2O.4, H2O.6, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J.W. et al., Rational design to improve thermostability and specific activity of the truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase. Appl.Microbiol.Biotechnol. (2012)

Release Date

2012-02-15

Peptides

Beta-glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucanase

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