- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.3: 40 residues within 4Å:- Chain A: V.62, G.63, G.64, G.65, A.66, G.67, Y.93, E.94, A.95, D.96, G.118, R.119, V.120, V.139, G.140, A.141, M.142, R.143, F.144, E.372, R.373, V.374, A.409, V.410, P.411, Q.414, I.418, S.476, Y.536, W.608, G.616, F.617, S.651, D.652, G.659, W.660, L.661, A.664
- Ligands: PHE.4, GOL.5
36 PLIP interactions:35 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:R.119, A:W.608
- Hydrogen bonds: A:G.64, A:A.66, A:G.67, A:A.95, A:D.96, A:R.119, A:A.141, A:M.142, A:R.143, A:R.143, A:V.374, A:V.374, A:D.652, A:D.652, A:D.652, A:L.661, F.4
- Water bridges: A:G.64, A:G.65, A:G.68, A:E.94, A:E.94, A:G.118, A:V.120, A:V.120, A:R.373, A:Q.414, A:Q.414, A:Q.414, A:Q.414, A:E.662
- Salt bridges: A:R.119, A:R.119
- pi-Stacking: A:F.617
FAD.6: 39 residues within 4Å:- Chain B: V.62, G.63, G.64, G.65, A.66, G.67, Y.93, E.94, A.95, D.96, G.118, R.119, V.120, G.140, A.141, M.142, R.143, F.144, E.372, R.373, V.374, A.409, V.410, P.411, Q.414, I.418, S.476, Y.536, W.608, G.616, F.617, S.651, D.652, G.659, W.660, L.661, A.664
- Ligands: PHE.7, GOL.8
35 PLIP interactions:34 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:R.119, B:W.608
- Hydrogen bonds: B:G.64, B:A.66, B:G.67, B:A.95, B:D.96, B:G.118, B:R.119, B:A.141, B:M.142, B:R.143, B:R.143, B:V.374, B:V.374, B:D.652, B:L.661, F.7
- Water bridges: B:G.64, B:G.65, B:G.68, B:E.94, B:E.94, B:D.96, B:V.120, B:V.120, B:R.373, B:Q.414, B:Q.414, B:Q.414, B:Q.414, B:E.662
- Salt bridges: B:R.119, B:R.119
- pi-Stacking: B:F.617
- 2 x PHE: PHENYLALANINE(Non-covalent)
PHE.4: 10 residues within 4Å:- Chain A: R.143, F.316, L.319, Y.536, W.538, F.617, L.619, G.659, W.660
- Ligands: FAD.3
13 PLIP interactions:11 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:F.316, A:L.319, A:W.538, A:F.617, A:F.617, A:L.619, A:W.660
- Hydrogen bonds: A:Y.536, A:G.659, F.4, F.4
- Water bridges: A:R.143
- Salt bridges: A:R.143
PHE.7: 10 residues within 4Å:- Chain B: R.143, F.316, L.319, Y.536, W.538, F.617, L.619, G.659, W.660
- Ligands: FAD.6
12 PLIP interactions:10 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:F.316, B:L.319, B:W.538, B:F.617, B:F.617, B:L.619, B:W.660
- Hydrogen bonds: B:G.659, F.7, F.7
- Water bridges: B:R.143
- Salt bridges: B:R.143
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: A.95, D.96, Q.414, N.611, K.612
- Ligands: FAD.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.414, A:N.611
- Water bridges: A:N.611, A:N.611, A:K.612
GOL.8: 6 residues within 4Å:- Chain B: A.95, D.96, Q.414, N.611, K.612
- Ligands: FAD.6
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.414, B:N.611
- Water bridges: B:N.611, B:N.611, B:K.612, B:K.612
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ida, K. et al., High resolution X-ray crystal structures of L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. Structures of the enzyme-ligand complex and catalytic mechanism. J.Biochem. (2011)
- Release Date
- 2011-08-31
- Peptides
- Pro-enzyme of L-phenylalanine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x PHE: PHENYLALANINE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ida, K. et al., High resolution X-ray crystal structures of L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. Structures of the enzyme-ligand complex and catalytic mechanism. J.Biochem. (2011)
- Release Date
- 2011-08-31
- Peptides
- Pro-enzyme of L-phenylalanine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B