- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NOS: INOSINE(Non-covalent)
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 8 residues within 4Å:- Chain A: Q.113, P.248, T.249, G.250, C.251, G.252
- Chain B: N.34
- Ligands: NOS.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:P.248
- Hydrogen bonds: A:G.250, A:C.251, A:G.252
- Water bridges: A:Q.113, A:T.249, A:D.253
ACT.3: 4 residues within 4Å:- Chain A: R.43, E.45, Q.287
- Ligands: ACT.4
No protein-ligand interaction detected (PLIP)ACT.4: 4 residues within 4Å:- Chain A: H.286, Q.287, T.291
- Ligands: ACT.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.287, A:T.291, A:T.291
- Water bridges: A:R.244
- Salt bridges: A:R.244, A:H.286
ACT.10: 4 residues within 4Å:- Chain B: H.286, Q.287, T.291
- Ligands: ACT.11
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.287, B:T.291
- Water bridges: B:R.244
- Salt bridges: B:R.244, B:H.286
ACT.11: 4 residues within 4Å:- Chain B: R.43, E.45, Q.287
- Ligands: ACT.10
3 PLIP interactions:3 interactions with chain B- Water bridges: B:E.45, B:E.45, B:E.45
ACT.12: 4 residues within 4Å:- Chain B: Y.188, I.263, F.267, W.269
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.267
ACT.13: 8 residues within 4Å:- Chain A: N.34
- Chain B: Q.113, P.248, T.249, G.250, C.251, G.252
- Ligands: NOS.9
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.250, B:C.251, B:G.252
- Water bridges: B:D.253
ACT.14: 4 residues within 4Å:- Chain B: T.16, E.18, T.41, R.43
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:T.16
- Hydrogen bonds: B:T.16
- Water bridges: B:Q.287, B:Q.287, B:Q.287
- Salt bridges: B:R.43
- 3 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
P33.5: 9 residues within 4Å:- Chain A: V.240, R.241, A.242, E.243, L.278, L.282, A.301, R.302, T.305
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.243, A:R.302
- Water bridges: A:A.281, A:T.305
P33.6: 4 residues within 4Å:- Chain A: Y.11, R.44, F.46, D.74
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.44, A:D.74, A:D.74
- Water bridges: A:R.44
P33.15: 3 residues within 4Å:- Chain B: Y.11, R.44, F.46
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.44
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.7: 6 residues within 4Å:- Chain A: I.183, E.184, L.185, A.186, R.213, V.214
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.184
NA.8: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.16: 6 residues within 4Å:- Chain B: I.183, E.184, L.185, A.186, R.213, V.214
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.213
NA.17: 1 residues within 4Å:- Chain B: I.246
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.246
NA.18: 1 residues within 4Å:- Chain B: G.204
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.204
NA.19: 2 residues within 4Å:- Chain B: Q.169, E.195
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.195
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yasutake, Y. et al., Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity. Acta Crystallogr.,Sect.D (2011)
- Release Date
- 2011-11-02
- Peptides
- Ribokinase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NOS: INOSINE(Non-covalent)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- 3 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yasutake, Y. et al., Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity. Acta Crystallogr.,Sect.D (2011)
- Release Date
- 2011-11-02
- Peptides
- Ribokinase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
E