SMTL ID : 3b6u.1 (1 other biounit)

Crystal structure of the motor domain of human kinesin family member 3B in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.116 Ligands: ADP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.116, H2O.1, H2O.2, H2O.4, H2O.5 MG.5: 2 residues within 4Å: Chain B: T.116 Ligands: ADP.6 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.116, H2O.10, H2O.11, H2O.11, H2O.14

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: R.28, R.30, P.31, Q.110, T.111, G.112, T.113, G.114, K.115, T.116, Y.117 Ligands: MG.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.28, A:G.112, A:T.113, A:T.113, A:G.114, A:K.115, A:T.116, A:Y.117 Water bridges: A:R.28, A:R.28, A:T.111, A:K.115, A:Y.117 Salt bridges: A:K.115 pi-Stacking: A:Y.117, A:Y.117 ADP.6: 12 residues within 4Å: Chain B: R.28, R.30, P.31, Q.110, T.111, G.112, T.113, G.114, K.115, T.116, Y.117 Ligands: MG.5 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:R.28, B:G.112, B:T.113, B:T.113, B:G.114, B:K.115, B:T.116, B:Y.117 Water bridges: B:R.28, B:N.33, B:T.111, B:K.115, B:T.116, B:T.116, B:T.116 Salt bridges: B:K.115 pi-Stacking: B:Y.117, B:Y.117

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 5 residues within 4Å: Chain A: Q.162, E.163, H.229, N.282, S.284 No protein-ligand interaction detected (PLIP) UNX.4: 5 residues within 4Å: Chain A: Y.108, G.109, L.259, A.260, S.262 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain B: I.281, N.282, L.283 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain B: R.145 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain B: P.31, M.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., Motor domain of human kinesin family member 3B in complex with ADP. To be Published

Release Date

2007-11-13

Peptides

Kinesin-like protein KIF3B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Kinesin-like protein KIF3B

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