SMTL ID : 3b8r.1 (1 other biounit)

Crystal structure of the VEGFR2 kinase domain in complex with a naphthamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: S.236, D.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.236, A:D.265, A:D.265

1 x 887: N-cyclopropyl-6-[(6,7-dimethoxyquinolin-4-yl)oxy]naphthalene-1-carboxamide(Non-covalent)

887.2: 20 residues within 4Å: Chain A: L.26, V.34, A.52, K.54, E.71, I.74, L.75, V.85, V.100, T.102, E.103, F.104, C.105, K.106, G.108, L.171, C.181, D.182, F.183, L.185 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.26, A:V.34, A:A.52, A:K.54, A:E.71, A:I.74, A:L.75, A:L.75, A:V.100, A:T.102, A:F.183, A:L.185 Hydrogen bonds: A:E.71, A:C.105, A:D.182 pi-Cation interactions: A:K.54, A:K.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weiss, M.M. et al., Evaluation of a Series of Naphthamides as Potent, Orally Active Vascular Endothelial Growth Factor Receptor-2 Tyrosine Kinase Inhibitors. J.Med.Chem. (2008)

Release Date

2008-04-01

Peptides

Vascular endothelial growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vascular endothelial growth factor receptor 2

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