SMTL ID : 3b9c.1 (2 other biounits)

Crystal Structure of Human GRP CRD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.70, E.81, Q.82, S.83, A.84 Chain D: T.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.83, A:S.83, A:A.84 Water bridges: A:R.70 SO4.2: 6 residues within 4Å: Chain A: R.66, Y.87, F.88 Chain D: R.66, Y.87, F.88 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:F.88, D:F.88 Water bridges: A:R.66 Salt bridges: A:R.66, D:R.66 SO4.4: 5 residues within 4Å: Chain B: R.70, Q.82, S.83, A.84 Chain C: T.64 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:S.83, B:A.84, C:T.64 Water bridges: B:R.70 SO4.5: 6 residues within 4Å: Chain B: R.66, Y.87, F.88 Chain C: R.66, Y.87, F.88 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:F.88, B:F.88 Water bridges: C:F.88, B:R.66, B:R.66 Salt bridges: C:R.66, B:R.66 SO4.8: 5 residues within 4Å: Chain B: T.64 Chain C: R.70, Q.82, S.83, A.84 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.83, C:A.84, B:T.64 Water bridges: C:E.80, C:E.80, C:Q.82, C:S.83, B:T.64 SO4.11: 5 residues within 4Å: Chain A: T.64 Chain D: R.70, Q.82, S.83, A.84 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.83, D:S.83, D:A.84 Water bridges: D:R.70 SO4.12: 2 residues within 4Å: Chain D: R.106, R.108 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.106, D:R.108

6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 4 residues within 4Å: Chain A: C.45, G.46, A.128, D.130 No protein-ligand interaction detected (PLIP) BME.6: 4 residues within 4Å: Chain B: K.25, E.99, L.101, F.110 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.99 BME.7: 4 residues within 4Å: Chain B: C.45, G.46, A.128, D.130 1 PLIP interactions: 1 interactions with chain B Water bridges: B:C.45 BME.9: 2 residues within 4Å: Chain C: A.128, D.130 No protein-ligand interaction detected (PLIP) BME.10: 2 residues within 4Å: Chain C: Y.104, Q.124 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.124 BME.13: 3 residues within 4Å: Chain D: G.46, A.128, D.130 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Crystal structure of the C-terminal conserved domain of human GRP, a galectin-related protein, reveals a function mode different from those of galectins. Proteins (2008)

Release Date

2008-03-18

Peptides

HSPC159: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
C

D
B

HSPC159

Related Entries With Identical Sequence