SMTL ID : 3b9t.1 (1 other biounit)

Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.342, H.344, E.358 Ligands: MG.2, EDO.11 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.342, A:D.342, A:H.344, A:E.358, A:E.358 MG.2: 8 residues within 4Å: Chain A: H.161, N.315, D.317, D.342, H.344, E.351 Ligands: MG.1, EDO.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.317, A:D.317, A:D.342 MG.14: 6 residues within 4Å: Chain B: H.111, D.342, H.344, E.358 Ligands: MG.15, EDO.16 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.342, B:D.342, B:H.344, B:E.358, B:E.358 MG.15: 7 residues within 4Å: Chain B: H.161, N.315, D.317, D.342, H.344 Ligands: MG.14, EDO.16 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.317, B:D.317, B:D.342

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: T.67, S.68 Ligand excluded by PLIP

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: G.175, D.176, P.330, V.331, L.375, L.383, Q.384 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: W.394, Q.441, K.476, F.479, G.481 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: D.184, A.186, T.362, T.364 Ligand excluded by PLIP EDO.7: 9 residues within 4Å: Chain A: V.160, H.161, W.208, V.307, N.315, G.354, V.464, D.465 Ligands: EDO.11 Ligand excluded by PLIP EDO.8: 8 residues within 4Å: Chain A: K.81, T.82, V.83, S.84, L.92, V.95, G.165, P.166 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: E.407, R.431 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: R.181, G.324, A.325, T.326, E.389, T.390, Q.391 Ligand excluded by PLIP EDO.11: 13 residues within 4Å: Chain A: H.111, V.160, H.161, N.315, D.317, D.342, E.351, G.354, E.358, D.465 Ligands: MG.1, MG.2, EDO.7 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain A: R.320, D.349, D.457, F.458, G.459, H.471, V.473 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: D.116, S.118, F.242, Y.243, K.275, Y.277 Ligand excluded by PLIP EDO.16: 13 residues within 4Å: Chain B: H.111, V.160, H.161, N.315, D.317, D.342, E.351, G.354, E.358, D.465 Ligands: MG.14, MG.15, EDO.20 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: G.175, D.176, P.330, L.375, L.383, Q.384 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain B: D.184, V.185, A.186, T.362, T.364 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain B: A.301, D.302, L.303 Ligand excluded by PLIP EDO.20: 9 residues within 4Å: Chain B: V.160, H.161, W.208, V.307, N.315, G.354, V.464, D.465 Ligands: EDO.16 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain B: Y.132, W.133, D.134 Ligand excluded by PLIP EDO.22: 7 residues within 4Å: Chain B: K.81, T.82, V.83, S.84, L.92, G.165, P.166 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain B: D.116, S.118, F.242, Y.243, K.275, Y.277 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution. To be published

Release Date

2007-11-20

Peptides

Twin-arginine translocation pathway signal protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Twin-arginine translocation pathway signal protein

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