SMTL ID : 3b9t.2 (1 other biounit)

Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.342, H.344, E.358 Ligands: MG.2, EDO.13 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.342, A:D.342, A:H.344, A:E.358, A:E.358 MG.2: 7 residues within 4Å: Chain A: H.161, N.315, D.317, D.342, H.344 Ligands: MG.1, EDO.13 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.317, A:D.317, A:D.342 MG.16: 5 residues within 4Å: Chain B: D.342, H.344, E.358 Ligands: MG.17, EDO.20 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.342, B:D.342, B:H.344, B:E.358, B:E.358 MG.17: 8 residues within 4Å: Chain B: H.161, T.293, N.315, D.317, D.342, H.344 Ligands: MG.16, EDO.20 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.317, B:D.317, B:D.342

23 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: G.175, D.176, P.330, V.331, L.375, L.383, Q.384 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: W.394, Q.441, K.476, F.479, G.481 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: D.184, V.185, A.186, T.362, T.364 Ligand excluded by PLIP EDO.6: 10 residues within 4Å: Chain A: V.160, H.161, W.208, V.307, N.315, G.354, V.464, D.465 Ligands: EDO.8, EDO.13 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: F.131, Y.132, W.133, D.134 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: G.157, V.160, W.208, V.307, F.417 Ligands: EDO.6 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: E.214, I.216 Chain B: R.431, R.434 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: G.324, A.325, T.326, E.389, T.390 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: K.170, G.171, L.369, K.371 Ligand excluded by PLIP EDO.12: 9 residues within 4Å: Chain A: K.81, T.82, V.83, S.84, L.92, K.93, V.95, G.165, P.166 Ligand excluded by PLIP EDO.13: 13 residues within 4Å: Chain A: H.111, V.160, H.161, N.315, D.317, D.342, E.351, G.354, E.358, D.465 Ligands: MG.1, MG.2, EDO.6 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: R.320, D.349, D.457, F.458, G.459, H.471, V.473 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: E.179, Y.328, H.370, P.379, L.380, W.394 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: E.235, R.236 Ligand excluded by PLIP EDO.20: 13 residues within 4Å: Chain B: H.111, H.161, N.315, D.317, D.342, E.351, G.354, T.355, E.358, D.465 Ligands: MG.16, MG.17, EDO.25 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain B: G.175, D.176, P.330, V.331, L.375, L.383, Q.384 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain B: W.394, Q.441, K.476, F.479, G.481 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain B: D.184, A.186, T.362, T.364 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain B: Y.132, W.133, D.134 Ligand excluded by PLIP EDO.25: 9 residues within 4Å: Chain B: V.160, H.161, W.208, V.307, N.315, G.354, V.464, D.465 Ligands: EDO.20 Ligand excluded by PLIP EDO.26: 5 residues within 4Å: Chain B: K.138, N.139, V.140, D.141, R.142 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain B: K.81, T.82, V.83, S.84, G.165, P.166 Ligand excluded by PLIP EDO.28: 7 residues within 4Å: Chain B: R.320, D.349, D.457, F.458, G.459, H.471, V.473 Ligand excluded by PLIP

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.18: 4 residues within 4Å: Chain B: D.392, K.475, K.476, G.477 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of predicted acetamidase/formamidase (YP_546212.1) from Methylobacillus flagellatus KT at 1.58 A resolution. To be published

Release Date

2007-11-20

Peptides

Twin-arginine translocation pathway signal protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Twin-arginine translocation pathway signal protein

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