SMTL ID : 3bbp.1 (6 other biounits)

Rab6-GTP:GCC185 Rab binding domain complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.29, T.30, T.48, D.71, T.72 Ligands: GTP.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.30, A:T.48, A:D.71 MG.3: 6 residues within 4Å: Chain B: K.29, T.30, T.48, D.71, T.72 Ligands: GTP.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:T.30, B:T.48, B:D.71

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 25 residues within 4Å: Chain A: E.24, Q.25, S.26, V.27, G.28, K.29, T.30, S.31, F.41, D.42, N.43, Y.45, Q.46, A.47, T.48, A.73, G.74, N.129, K.130, D.132, L.133, S.159, A.160, K.161 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.26, A:V.27, A:G.28, A:K.29, A:T.30, A:T.30, A:S.31, A:D.42, A:T.48, A:T.48, A:T.48, A:G.74, A:N.129, A:K.130, A:K.130, A:A.160, A:K.161 Salt bridges: A:K.29, A:K.29, A:D.132 pi-Stacking: A:F.41 GTP.4: 25 residues within 4Å: Chain B: E.24, Q.25, S.26, V.27, G.28, K.29, T.30, S.31, F.41, D.42, N.43, Y.45, Q.46, A.47, T.48, A.73, G.74, N.129, K.130, D.132, L.133, S.159, A.160, K.161 Ligands: MG.3 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:S.26, B:V.27, B:G.28, B:K.29, B:T.30, B:T.30, B:T.30, B:S.31, B:D.42, B:T.48, B:T.48, B:T.48, B:G.74, B:N.129, B:K.130, B:K.130, B:A.160, B:K.161 Salt bridges: B:K.29, B:K.29, B:D.132 pi-Stacking: B:F.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burguete, A.S. et al., Rab and Arl GTPase family members cooperate in the localization of the golgin GCC185. Cell(Cambridge,Mass.) (2008)

Release Date

2008-02-05

Peptides

Ras-related protein Rab-6A: AB
GRIP and coiled-coil domain-containing protein 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

Ras-related protein Rab-6A

GRIP and coiled-coil domain-containing protein 2

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