SMTL ID : 3bbp.2 (6 other biounits)

Rab6-GTP:GCC185 Rab binding domain complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.29, T.30, T.48, D.71, T.72 Ligands: GTP.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.30, A:T.48, A:D.71, A:T.72 MG.3: 6 residues within 4Å: Chain C: K.29, T.30, T.48, D.71, T.72 Ligands: GTP.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:T.30, C:T.48, C:D.71, C:T.72

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 25 residues within 4Å: Chain A: E.24, Q.25, S.26, V.27, G.28, K.29, T.30, S.31, F.41, D.42, N.43, Y.45, Q.46, A.47, T.48, A.73, G.74, N.129, K.130, D.132, L.133, S.159, A.160, K.161 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:S.26, A:V.27, A:G.28, A:K.29, A:T.30, A:T.30, A:T.30, A:S.31, A:D.42, A:Y.45, A:T.48, A:T.48, A:T.48, A:T.48, A:G.74, A:N.129, A:K.130, A:K.130, A:A.160, A:K.161 Salt bridges: A:K.29, A:K.29, A:D.132 pi-Stacking: A:F.41 GTP.4: 25 residues within 4Å: Chain C: E.24, Q.25, S.26, V.27, G.28, K.29, T.30, S.31, F.41, D.42, N.43, Y.45, Q.46, A.47, T.48, A.73, G.74, N.129, K.130, D.132, L.133, S.159, A.160, K.161 Ligands: MG.3 24 PLIP interactions: 24 interactions with chain C Hydrogen bonds: C:S.26, C:V.27, C:G.28, C:K.29, C:T.30, C:T.30, C:T.30, C:S.31, C:D.42, C:Y.45, C:T.48, C:T.48, C:T.48, C:T.48, C:G.74, C:N.129, C:K.130, C:K.130, C:A.160, C:K.161 Salt bridges: C:K.29, C:K.29, C:D.132 pi-Stacking: C:F.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burguete, A.S. et al., Rab and Arl GTPase family members cooperate in the localization of the golgin GCC185. Cell(Cambridge,Mass.) (2008)

Release Date

2008-02-05

Peptides

Ras-related protein Rab-6A: AC
GRIP and coiled-coil domain-containing protein 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
C

B
F

D
F

Ras-related protein Rab-6A

GRIP and coiled-coil domain-containing protein 2

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