SMTL ID : 3bd4.3 (2 other biounits)

Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x CD: CADMIUM ION(Non-covalent)

CD.1: 6 residues within 4Å: Chain A: Y.37, L.38, Y.54, W.55, S.96 Ligands: BTB.2 No protein-ligand interaction detected (PLIP) CD.3: 1 residues within 4Å: Chain B: S.96 No protein-ligand interaction detected (PLIP)

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 9 residues within 4Å: Chain A: Y.37, A.39, Y.41, L.51, W.55, K.94, S.96, Y.101 Ligands: CD.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.41, A:K.94, A:S.96, A:Y.101 Water bridges: A:S.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.Y. et al., Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals. Proteins (2008)

Release Date

2008-04-01

Peptides

catalytic antibody: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

catalytic antibody

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