SMTL ID : 3bdp.1

DNA POLYMERASE I/DNA COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain C: H.386, R.406, K.410 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.406, C:K.410 SO4.2: 3 residues within 4Å: Chain C: M.3, A.4, R.47 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.4 Water bridges: C:R.47 Salt bridges: C:R.47 SO4.3: 5 residues within 4Å: Chain C: Y.358, S.359, Q.360, D.569 Ligands: SO4.1 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Q.360, C:Q.360, C:D.569, C:D.569 Water bridges: C:D.357, C:S.359, C:I.361 SO4.4: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:H.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiefer, J.R. et al., Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal. Nature (1998)

Release Date

1999-01-13

Peptides

PROTEIN (DNA POLYMERASE I): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

PROTEIN (DNA POLYMERASE I)

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