SMTL ID : 3beb.1

Crystal structure of E. coli penicillin-binding protein 5 in complex with a peptide-mimetic penicillin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HJ3: (2R,4S)-2-[(1R)-1-{[(6S)-6-amino-6-carboxyhexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Covalent)

HJ3.1: 8 residues within 4Å: Chain A: A.43, S.44, S.86, R.198, T.214, G.215, H.216, T.217 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.217 Hydrogen bonds: A:S.44, A:G.215, A:H.216, A:H.216 Water bridges: A:N.112

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.134, V.137, N.138, T.145, H.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.134, A:N.134, A:N.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauvage, E. et al., Crystal structures of complexes of bacterial DD-peptidases with peptidoglycan-mimetic ligands: the substrate specificity puzzle. J.Mol.Biol. (2008)

Release Date

2008-08-26

Peptides

Penicillin-binding protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 5

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