SMTL ID : 3mzd.1

Structure of penicillin-binding protein 5 from E. coli: cloxacillin acyl-enzyme complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CXV: (2R,4S)-2-[(1S)-1-({[3-(2-chlorophenyl)-5-methyl-1,2-oxazol-4-yl]carbonyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolid ine-4-carboxylic acid(Covalent)

CXV.1: 14 residues within 4Å: Chain A: A.43, S.44, V.82, S.86, S.87, N.112, H.151, G.152, L.153, R.198, T.214, G.215, H.216, T.217 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.153 Hydrogen bonds: A:S.44, A:S.87, A:N.112, A:T.214, A:H.216 Water bridges: A:T.214, A:T.214

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.134, V.137, N.138, T.145, H.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.134, A:N.138, A:N.138 Water bridges: A:Y.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicola, G. et al., Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity. Biochemistry (2010)

Release Date

2011-03-16

Peptides

D-alanyl-D-alanine carboxypeptidase dacA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-alanyl-D-alanine carboxypeptidase dacA

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