- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x CYN: CYANIDE ION(Non-covalent)
CYN.2: 6 residues within 4Å:- Chain A: N.254, H.256, G.286, I.288
- Chain B: T.57
- Ligands: URC.4
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.254, B:T.57
CYN.6: 6 residues within 4Å:- Chain A: T.57
- Chain B: N.254, H.256, G.286, I.288
- Ligands: URC.8
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.254, A:T.57
CYN.10: 6 residues within 4Å:- Chain C: N.254, H.256, G.286, I.288
- Chain D: T.57
- Ligands: URC.12
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.254
CYN.14: 6 residues within 4Å:- Chain C: T.57
- Chain D: N.254, H.256, G.286, I.288
- Ligands: URC.16
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.254
- 4 x ACE: ACETYL GROUP(Non-functional Binders)
ACE.3: 3 residues within 4Å:- Chain A: S.1
- Chain B: R.294, S.295
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.295
ACE.7: 3 residues within 4Å:- Chain A: R.294, S.295
- Chain B: S.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.295
ACE.11: 3 residues within 4Å:- Chain C: S.1
- Chain D: R.294, S.295
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.295
ACE.15: 3 residues within 4Å:- Chain C: R.294, S.295
- Chain D: S.1
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.295
- 4 x URC: URIC ACID(Non-covalent)
URC.4: 14 residues within 4Å:- Chain A: F.159, L.170, R.176, S.226, V.227, Q.228, N.254, I.288
- Chain B: Y.8, I.54, A.56, T.57, D.58
- Ligands: CYN.2
11 PLIP interactions:8 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.176, A:R.176, A:V.227, A:Q.228, A:Q.228, A:N.254, B:T.57, B:D.58
- pi-Stacking: A:F.159, A:F.159
- Water bridges: B:K.10
URC.8: 14 residues within 4Å:- Chain A: Y.8, I.54, A.56, T.57, D.58
- Chain B: F.159, L.170, R.176, S.226, V.227, Q.228, N.254, I.288
- Ligands: CYN.6
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.176, B:R.176, B:V.227, B:Q.228, B:Q.228, B:N.254, A:T.57, A:D.58
- pi-Stacking: B:F.159, B:F.159
- Water bridges: A:K.10
URC.12: 14 residues within 4Å:- Chain C: F.159, L.170, R.176, S.226, V.227, Q.228, N.254, I.288
- Chain D: Y.8, I.54, A.56, T.57, D.58
- Ligands: CYN.10
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:R.176, C:R.176, C:V.227, C:Q.228, C:Q.228, C:N.254, D:T.57, D:D.58
- pi-Stacking: C:F.159, C:F.159
- Water bridges: D:K.10, D:T.57
URC.16: 14 residues within 4Å:- Chain C: Y.8, I.54, A.56, T.57, D.58
- Chain D: F.159, L.170, R.176, S.226, V.227, Q.228, N.254, I.288
- Ligands: CYN.14
12 PLIP interactions:8 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:R.176, D:R.176, D:V.227, D:Q.228, D:Q.228, D:N.254, C:T.57, C:D.58
- pi-Stacking: D:F.159, D:F.159
- Water bridges: C:K.10, C:T.57
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gabison, L. et al., Structural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: Mechanistic implications. Bmc Struct.Biol. (2008)
- Release Date
- 2008-08-12
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x CYN: CYANIDE ION(Non-covalent)
- 4 x ACE: ACETYL GROUP(Non-functional Binders)
- 4 x URC: URIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gabison, L. et al., Structural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: Mechanistic implications. Bmc Struct.Biol. (2008)
- Release Date
- 2008-08-12
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A