SMTL ID : 3bk0.1

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: L.61, R.63 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.63 SO4.2: 4 residues within 4Å: Chain A: S.25, G.27, A.28, E.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.25, A:S.25 Water bridges: A:E.31

2 x CNU: 5-CYANO-URIDINE-5'-MONOPHOSPHATE(Non-covalent)

CNU.3: 19 residues within 4Å: Chain A: S.56, D.58, K.80, H.82, D.111, N.140, I.167, M.170, S.171, I.200, P.216, Q.229, Y.231, V.248, G.249, R.250 Chain B: D.116, I.117, T.120 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.216 Hydrogen bonds: A:S.56, A:D.58, A:K.80, A:N.140, A:S.171, A:S.171, A:S.171, A:Q.229, A:Y.231, A:Y.231, A:G.249, A:R.250, B:T.120 Water bridges: A:G.217, A:G.217, A:G.251 Salt bridges: A:R.250 CNU.6: 19 residues within 4Å: Chain A: D.116, I.117, T.120 Chain B: S.56, D.58, K.80, H.82, D.111, N.140, I.167, M.170, S.171, I.200, P.216, Q.229, Y.231, V.248, G.249, R.250 19 PLIP interactions: 17 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.216 Hydrogen bonds: B:S.56, B:D.58, B:K.80, B:N.140, B:S.171, B:S.171, B:S.171, B:Q.229, B:Y.231, B:Y.231, B:G.249, B:R.250, A:T.120, A:T.120 Water bridges: B:G.217, B:G.217, B:G.251 Salt bridges: B:R.250

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: K.41, A.101, K.102, E.105, F.106, D.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.41, A:F.106 Water bridges: A:D.137, A:D.137 GOL.5: 6 residues within 4Å: Chain A: R.34, I.35, H.36, P.37, S.193, E.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.193 Water bridges: A:H.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP. To be Published

Release Date

2008-11-18

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

Related Entries With Identical Sequence