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SMTL ID : 3bk8.1
Urate oxidase aza-xanthine complex in cyanide
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
homo-tetramer
Ligands
4 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.1:
5 residues within 4Å:
Chain A:
I.88
,
Y.91
,
N.92
,
I.94
,
E.136
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:I.94
,
A:H.95
,
A:E.136
NA.3:
5 residues within 4Å:
Chain B:
I.88
,
Y.91
,
N.92
,
I.94
,
E.136
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:I.88
,
B:I.94
,
B:H.95
NA.5:
5 residues within 4Å:
Chain C:
I.88
,
Y.91
,
N.92
,
I.94
,
E.136
2
PLIP interactions
:
2 interactions with chain C
Hydrogen bonds:
C:I.94
,
C:I.94
NA.7:
5 residues within 4Å:
Chain D:
I.88
,
Y.91
,
N.92
,
I.94
,
E.136
2
PLIP interactions
:
2 interactions with chain D
Hydrogen bonds:
D:N.92
,
D:I.94
4 x
AZA
:
8-AZAXANTHINE
(Non-covalent)
AZA.2:
12 residues within 4Å:
Chain A:
F.159
,
L.170
,
R.176
,
S.226
,
V.227
,
Q.228
,
N.254
Chain B:
Y.8
,
I.54
,
A.56
,
T.57
,
D.58
13
PLIP interactions
:
9 interactions with chain A
,
4 interactions with chain B
Hydrogen bonds:
A:R.176
,
A:R.176
,
A:V.227
,
A:Q.228
,
A:Q.228
,
A:N.254
,
B:T.57
,
B:D.58
Water bridges:
A:H.256
,
B:T.57
,
B:T.57
pi-Stacking:
A:F.159
,
A:F.159
AZA.4:
12 residues within 4Å:
Chain A:
Y.8
,
I.54
,
A.56
,
T.57
,
D.58
Chain B:
F.159
,
L.170
,
R.176
,
S.226
,
V.227
,
Q.228
,
N.254
13
PLIP interactions
:
4 interactions with chain A
,
9 interactions with chain B
Hydrogen bonds:
A:T.57
,
A:D.58
,
B:R.176
,
B:R.176
,
B:V.227
,
B:Q.228
,
B:Q.228
,
B:N.254
Water bridges:
A:T.57
,
A:T.57
,
B:H.256
pi-Stacking:
B:F.159
,
B:F.159
AZA.6:
12 residues within 4Å:
Chain C:
F.159
,
L.170
,
R.176
,
S.226
,
V.227
,
Q.228
,
N.254
Chain D:
Y.8
,
I.54
,
A.56
,
T.57
,
D.58
11
PLIP interactions
:
9 interactions with chain C
,
2 interactions with chain D
Hydrogen bonds:
C:R.176
,
C:R.176
,
C:V.227
,
C:Q.228
,
C:Q.228
,
C:N.254
,
D:T.57
,
D:D.58
Water bridges:
C:H.256
pi-Stacking:
C:F.159
,
C:F.159
AZA.8:
12 residues within 4Å:
Chain C:
Y.8
,
I.54
,
A.56
,
T.57
,
D.58
Chain D:
F.159
,
L.170
,
R.176
,
S.226
,
V.227
,
Q.228
,
N.254
11
PLIP interactions
:
9 interactions with chain D
,
2 interactions with chain C
Hydrogen bonds:
D:R.176
,
D:R.176
,
D:V.227
,
D:Q.228
,
D:Q.228
,
D:N.254
,
C:T.57
,
C:D.58
Water bridges:
D:H.256
pi-Stacking:
D:F.159
,
D:F.159
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gabison, L. et al., Structural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: Mechanistic implications. Bmc Struct.Biol. (2008)
Release Date
2008-08-12
Peptides
Uricase:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
C
A
D
A
Export Alignment
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Secondary Structure
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2° Structure
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Toggle Identical (ABCD)
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|
1r51.1
|
1r56.1
|
1r56.2
|
1wrr.1
|
1ws2.1
|
1ws3.1
|
1xt4.1
|
1xxj.1
|
1xy3.1
|
1xy3.2
|
2fub.1
|
2fxl.1
|
3bjp.1
|
3gko.1
|
4cw0.1
|
4cw2.1
|
4cw3.1
|
4cw6.1
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